HL_4V8P_150

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUGAAGGCCUCUAAG

Length

15 nucleotides

Bulged bases

4V8P|1|D1|G|3105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.2

Basepair signature

cWW-tSH-cWH-tSH-tWH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V8P|1|D1|C|3099
4V8P|1|D1|U|3100
4V8P|1|D1|G|3101
4V8P|1|D1|A|3102
4V8P|1|D1|A|3103
4V8P|1|D1|G|3104
4V8P|1|D1|G|3105
4V8P|1|D1|C|3106
4V8P|1|D1|C|3107
4V8P|1|D1|U|3108
4V8P|1|D1|C|3109
4V8P|1|D1|U|3110
4V8P|1|D1|A|3111
4V8P|1|D1|A|3112
4V8P|1|D1|G|3113

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CE

60S RIBOSOMAL PROTEIN L9

Chain CI

60S RIBOSOMAL PROTEIN L13A

Chain DK

UBIQUITIN-60S RIBOSOMAL PROTEIN L40