3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
AAAAAAUAAAAAUUAAGU
Length
18 nucleotides
Bulged bases
4V8P|1|D1|A|3162, 4V8P|1|D1|A|3168, 4V8P|1|D1|U|3174
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_34327.1
Basepair signature
cWW-R-R-R-R-R-R-R-R-R-R-R-R
Number of instances in this motif group
1

Unit IDs

4V8P|1|D1|A|3161
4V8P|1|D1|A|3162
4V8P|1|D1|A|3163
4V8P|1|D1|A|3164
4V8P|1|D1|A|3165
4V8P|1|D1|A|3166
4V8P|1|D1|U|3167
4V8P|1|D1|A|3168
4V8P|1|D1|A|3169
4V8P|1|D1|A|3170
4V8P|1|D1|A|3171
4V8P|1|D1|A|3172
4V8P|1|D1|U|3173
4V8P|1|D1|U|3174
4V8P|1|D1|A|3175
4V8P|1|D1|A|3176
4V8P|1|D1|G|3177
4V8P|1|D1|U|3178

Current chains

Chain D1
26S RRNA

Nearby chains

Chain CE
60S RIBOSOMAL PROTEIN L9
Chain CI
60S RIBOSOMAL PROTEIN L13A
Chain DE
RPL6
Chain DF
RPL14
Chain DX
RPL18A

Coloring options:

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