HL_4V8P_156
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CGAAUUGCAGAACCGCGAG
- Length
- 19 nucleotides
- Bulged bases
- 4V8P|1|E2|C|87
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_90862.1
- Basepair signature
- cWW-tSH-tHS-tSS-R-R-R-cWW-R-R-R-R-R
- Number of instances in this motif group
- 1
Unit IDs
4V8P|1|E2|C|72
4V8P|1|E2|G|73
4V8P|1|E2|A|74
4V8P|1|E2|A|75
4V8P|1|E2|U|76
4V8P|1|E2|U|77
4V8P|1|E2|G|78
4V8P|1|E2|C|79
4V8P|1|E2|A|80
4V8P|1|E2|G|81
4V8P|1|E2|A|82
4V8P|1|E2|A|83
4V8P|1|E2|C|84
4V8P|1|E2|C|85
4V8P|1|E2|G|86
4V8P|1|E2|C|87
4V8P|1|E2|G|88
4V8P|1|E2|A|89
4V8P|1|E2|G|90
Current chains
- Chain E2
- 5.8S RRNA
Nearby chains
- Chain ES
- RPL26
- Chain EU
- RPL35
- Chain F1
- Large subunit ribosomal RNA; LSU rRNA
- Chain FA
- RIBOSOMAL PROTEIN L37
- Chain FB
- RPL39
Coloring options: