HL_4V8P_190

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73671.1

Basepair signature

cWW-R-R-tWH-R-R-R

Number of instances in this motif group

117

Unit IDs

4V8P|1|F1|A|1488
4V8P|1|F1|U|1489
4V8P|1|F1|G|1490
4V8P|1|F1|A|1491
4V8P|1|F1|G|1492
4V8P|1|F1|A|1493
4V8P|1|F1|A|1494
4V8P|1|F1|C|1495
4V8P|1|F1|U|1496

Current chains

Chain F1

26S RRNA

Nearby chains

Chain EO

RPL19

Chain EQ

RPL17

Chain EW

60S RIBOSOMAL PROTEIN L31