HL_4V8P_208

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAACUAUGA

Length

9 nucleotides

Bulged bases

4V8P|1|F1|U|2255, 4V8P|1|F1|G|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98240.1

Basepair signature

cWW-tSS-R-R

Number of instances in this motif group

1

Unit IDs

4V8P|1|F1|U|2249
4V8P|1|F1|A|2250
4V8P|1|F1|A|2251
4V8P|1|F1|C|2252
4V8P|1|F1|U|2253
4V8P|1|F1|A|2254
4V8P|1|F1|U|2255
4V8P|1|F1|G|2256
4V8P|1|F1|A|2257

Current chains

Chain F1

26S RRNA

Nearby chains

Chain CA

RPL8

Chain CY

RPL37A