HL_4V8P_238
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 4V8P|1|H1|A|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_238 not in the Motif Atlas
- Geometric match to HL_4WF9_006
- Geometric discrepancy: 0.1474
- The information below is about HL_4WF9_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4V8P|1|H1|U|36
4V8P|1|H1|A|37
4V8P|1|H1|A|38
4V8P|1|H1|G|39
4V8P|1|H1|C|40
4V8P|1|H1|A|41
4V8P|1|H1|U|42
4V8P|1|H1|A|43
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GK
- 60S RIBOSOMAL PROTEIN L27A
- Chain GL
- RIBOSOMAL PROTEIN L15
- Chain HC
- 60S RIBOSOMAL PROTEIN L36A
- Chain HU
- RPL13
Coloring options: