HL_4V8P_242

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

4V8P|1|H1|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_242 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.1253

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4V8P|1|H1|U|194
4V8P|1|H1|U|195
4V8P|1|H1|G|196
4V8P|1|H1|G|197
4V8P|1|H1|A|198
4V8P|1|H1|A|199
4V8P|1|H1|C|200
4V8P|1|H1|A|201

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GS

RPL26

Chain GX

60S RIBOSOMAL PROTEIN L32