HL_4V8P_263

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

4V8P|1|H1|G|1158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_263 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.0952

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8P|1|H1|G|1153
4V8P|1|H1|G|1154
4V8P|1|H1|U|1155
4V8P|1|H1|A|1156
4V8P|1|H1|A|1157
4V8P|1|H1|G|1158
4V8P|1|H1|C|1159

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GH

60S RIBOSOMAL PROTEIN L10

Chain HT

RPL29