HL_4V8P_268

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGCAAUU

Length

7 nucleotides

Bulged bases

4V8P|1|H1|G|1533, 4V8P|1|H1|U|1537

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_268 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.2273

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4V8P|1|H1|A|1532
4V8P|1|H1|G|1533
4V8P|1|H1|C|1534
4V8P|1|H1|A|1535
4V8P|1|H1|A|1536
4V8P|1|H1|U|1537
4V8P|1|H1|U|1538

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GO

RPL19

Chain GQ

RPL17

Chain HB

RPL39