HL_4V8P_278

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UUAGCAG

Length

7 nucleotides

Bulged bases

4V8P|1|H1|C|1890

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_278 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.1222

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8P|1|H1|U|1886
4V8P|1|H1|U|1887
4V8P|1|H1|A|1888
4V8P|1|H1|G|1889
4V8P|1|H1|C|1890
4V8P|1|H1|A|1891
4V8P|1|H1|G|1892

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GO

RPL19