HL_4V8P_296

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_296 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.1065

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8P|1|H1|C|2733
4V8P|1|H1|G|2734
4V8P|1|H1|A|2735
4V8P|1|H1|A|2736
4V8P|1|H1|A|2737
4V8P|1|H1|G|2738

Current chains

Chain H1

26S RRNA

Nearby chains

Chain GM

60S RIBOSOMAL PROTEIN L5

Chain GP

60S RIBOSOMAL PROTEIN L21

Chain HC

60S RIBOSOMAL PROTEIN L36A