HL_4V8P_302

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_302 not in the Motif Atlas

Geometric match to HL_5B2T_003

Geometric discrepancy: 0.0792

The information below is about HL_5B2T_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V8P|1|H1|C|3014
4V8P|1|H1|G|3015
4V8P|1|H1|A|3016
4V8P|1|H1|G|3017
4V8P|1|H1|A|3018
4V8P|1|H1|G|3019

Current chains

Chain H1

26S RRNA

Nearby chains

Chain BO

RPL19

Chain GE

60S RIBOSOMAL PROTEIN L9

Chain HK

UBIQUITIN-60S RIBOSOMAL PROTEIN L40