HL_4V8P_305
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AAAAAAUAAAAAUUAAGU
- Length
- 18 nucleotides
- Bulged bases
- 4V8P|1|H1|A|3162, 4V8P|1|H1|A|3168, 4V8P|1|H1|U|3174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_305 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.2922
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_56334.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 16
Unit IDs
4V8P|1|H1|A|3161
4V8P|1|H1|A|3162
4V8P|1|H1|A|3163
4V8P|1|H1|A|3164
4V8P|1|H1|A|3165
4V8P|1|H1|A|3166
4V8P|1|H1|U|3167
4V8P|1|H1|A|3168
4V8P|1|H1|A|3169
4V8P|1|H1|A|3170
4V8P|1|H1|A|3171
4V8P|1|H1|A|3172
4V8P|1|H1|U|3173
4V8P|1|H1|U|3174
4V8P|1|H1|A|3175
4V8P|1|H1|A|3176
4V8P|1|H1|G|3177
4V8P|1|H1|U|3178
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GE
- 60S RIBOSOMAL PROTEIN L9
- Chain GI
- 60S RIBOSOMAL PROTEIN L13A
- Chain HE
- RPL6
- Chain HF
- RPL14
- Chain HX
- RPL18A
Coloring options: