HL_4V8P_312

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UGUAAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8P_312 not in the Motif Atlas

Geometric match to HL_3HHN_010

Geometric discrepancy: 0.2166

The information below is about HL_3HHN_010

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V8P|1|C2|U|122
4V8P|1|C2|G|123
4V8P|1|C2|U|124
4V8P|1|C2|A|125
4V8P|1|C2|A|126
4V8P|1|C2|A|127
4V8P|1|C2|A|128
4V8P|1|C2|A|129

Current chains

Chain C2

5.8S RRNA

Nearby chains

Chain CR

RPL23A

Chain D1

Large subunit ribosomal RNA; LSU rRNA