HL_4V8P_320
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UGGAAAAA
- Length
- 8 nucleotides
- Bulged bases
- 4V8P|1|H1|A|716
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8P_320 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.293
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8P|1|H1|U|711
4V8P|1|H1|G|712
4V8P|1|H1|G|713
4V8P|1|H1|A|714
4V8P|1|H1|A|715
4V8P|1|H1|A|716
4V8P|1|H1|A|717
4V8P|1|H1|A|718
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain G2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain GC
- RPL4
- Chain GL
- RIBOSOMAL PROTEIN L15
- Chain GS
- RPL26
- Chain HU
- RPL13
Coloring options: