HL_4V8Q_012
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAGCC
- Length
- 9 nucleotides
- Bulged bases
- 4V8Q|1|AA|G|329, 4V8Q|1|AA|A|330, 4V8Q|1|AA|A|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Q_012 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.088
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
4V8Q|1|AA|G|327
4V8Q|1|AA|U|328
4V8Q|1|AA|G|329
4V8Q|1|AA|A|330
4V8Q|1|AA|A|331
4V8Q|1|AA|A|332
4V8Q|1|AA|G|333
4V8Q|1|AA|C|334
4V8Q|1|AA|C|335
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AF
- 50S RIBOSOMAL PROTEIN L4
- Chain AY
- 50S RIBOSOMAL PROTEIN L24
Coloring options: