HL_4V8Q_021

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4V8Q|1|AA|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_021 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.2849

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8Q|1|AA|C|641
4V8Q|1|AA|G|642
4V8Q|1|AA|A|643
4V8Q|1|AA|A|644
4V8Q|1|AA|C|645
4V8Q|1|AA|A|646
4V8Q|1|AA|G|647

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A6

50S RIBOSOMAL PROTEIN L33

Chain A8

50S RIBOSOMAL PROTEIN L35

Chain AP

50S RIBOSOMAL PROTEIN L15