HL_4V8Q_027

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4V8Q|1|AA|U|958, 4V8Q|1|AA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_027 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1178

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V8Q|1|AA|C|955
4V8Q|1|AA|G|956
4V8Q|1|AA|A|957
4V8Q|1|AA|U|958
4V8Q|1|AA|A|959
4V8Q|1|AA|A|960
4V8Q|1|AA|C|961
4V8Q|1|AA|G|962

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AQ

50S RIBOSOMAL PROTEIN L16