HL_4V8Q_048
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAAAUAUAAC
- Length
- 11 nucleotides
- Bulged bases
- 4V8Q|1|AA|A|1913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Q_048 not in the Motif Atlas
- Geometric match to HL_5TBW_049
- Geometric discrepancy: 0.1725
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8Q|1|AA|G|1910
4V8Q|1|AA|U|1911
4V8Q|1|AA|A|1912
4V8Q|1|AA|A|1913
4V8Q|1|AA|A|1914
4V8Q|1|AA|U|1915
4V8Q|1|AA|A|1916
4V8Q|1|AA|U|1917
4V8Q|1|AA|A|1918
4V8Q|1|AA|A|1919
4V8Q|1|AA|C|1920
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain B2
- SMALL PROTEIN B SMPB
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BM
- 30S RIBOSOMAL PROTEIN S13
- Chain BV
- Transfer RNA; tRNA
Coloring options: