HL_4V8Q_050

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V8Q|1|AA|A|2030, 4V8Q|1|AA|A|2031, 4V8Q|1|AA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_050 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1105

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V8Q|1|AA|G|2027
4V8Q|1|AA|U|2028
4V8Q|1|AA|G|2029
4V8Q|1|AA|A|2030
4V8Q|1|AA|A|2031
4V8Q|1|AA|G|2032
4V8Q|1|AA|A|2033
4V8Q|1|AA|U|2034
4V8Q|1|AA|G|2035
4V8Q|1|AA|C|2036

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A5

50S RIBOSOMAL PROTEIN L32

Chain AE

50S RIBOSOMAL PROTEIN L3

Chain AV

50S RIBOSOMAL PROTEIN L21