HL_4V8Q_064

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_064 not in the Motif Atlas

Homologous match to HL_5J7L_197

Geometric discrepancy: 0.1106

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8Q|1|AA|C|2658
4V8Q|1|AA|G|2659
4V8Q|1|AA|A|2660
4V8Q|1|AA|G|2661
4V8Q|1|AA|A|2662
4V8Q|1|AA|G|2663

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AH

50S RIBOSOMAL PROTEIN L6

Chain BZ

ELONGATION FACTOR TU