HL_4V8Q_072
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Q_072 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.07
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8Q|1|BA|U|12
4V8Q|1|BA|U|13
4V8Q|1|BA|U|14
4V8Q|1|BA|G|15
4V8Q|1|BA|A|16
4V8Q|1|BA|U|17
4V8Q|1|BA|C|18
4V8Q|1|BA|C|19
4V8Q|1|BA|U|20
4V8Q|1|BA|G|21
4V8Q|1|BA|G|22
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain B2
- SMALL PROTEIN B SMPB
- Chain BE
- 30S RIBOSOMAL PROTEIN S5
Coloring options: