HL_4V8Q_079

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_079 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0901

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8Q|1|BA|C|320
4V8Q|1|BA|A|321
4V8Q|1|BA|C|322
4V8Q|1|BA|U|323
4V8Q|1|BA|G|324
4V8Q|1|BA|A|325
4V8Q|1|BA|G|326
4V8Q|1|BA|A|327
4V8Q|1|BA|C|328
4V8Q|1|BA|A|329
4V8Q|1|BA|C|330
4V8Q|1|BA|G|331
4V8Q|1|BA|G|332
4V8Q|1|BA|G|333

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S RIBOSOMAL PROTEIN S16

Chain BT

30S RIBOSOMAL PROTEIN S20