HL_4V8Q_082

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

4V8Q|1|BA|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_082 not in the Motif Atlas

Geometric match to HL_5H9F_001

Geometric discrepancy: 0.3496

The information below is about HL_5H9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V8Q|1|BA|C|418
4V8Q|1|BA|C|419
4V8Q|1|BA|U|420
4V8Q|1|BA|U|421
4V8Q|1|BA|C|422
4V8Q|1|BA|G|423
4V8Q|1|BA|G|424
4V8Q|1|BA|G|425

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

30S RIBOSOMAL PROTEIN S3

Chain BD

30S RIBOSOMAL PROTEIN S4