HL_4V8Q_089

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

4V8Q|1|BA|U|839, 4V8Q|1|BA|U|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_089 not in the Motif Atlas

Geometric match to HL_4V88_197

Geometric discrepancy: 0.3304

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8Q|1|BA|G|837
4V8Q|1|BA|G|838
4V8Q|1|BA|U|839
4V8Q|1|BA|C|840
4V8Q|1|BA|U|841
4V8Q|1|BA|C|848
4V8Q|1|BA|C|849

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S RIBOSOMAL PROTEIN S2

Chain BR

30S RIBOSOMAL PROTEIN S18