HL_4V8Q_094

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Q_094 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.0945

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V8Q|1|BA|C|1076
4V8Q|1|BA|G|1077
4V8Q|1|BA|U|1078
4V8Q|1|BA|G|1079
4V8Q|1|BA|A|1080
4V8Q|1|BA|G|1081

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S RIBOSOMAL PROTEIN S2

Chain BE

30S RIBOSOMAL PROTEIN S5

Chain BH

30S RIBOSOMAL PROTEIN S8