HL_4V8T_033

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8T_033 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.0781

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8T|1|5|G|1544
4V8T|1|5|A|1545
4V8T|1|5|A|1546
4V8T|1|5|G|1547
4V8T|1|5|C|1548
4V8T|1|5|U|1549

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain N

60S RIBOSOMAL PROTEIN L15-A

Chain j

60S RIBOSOMAL PROTEIN L37-A