4V8T Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V8T_001 | No text annotation | ||
| HL_4V8T_002 | No text annotation | ||
| HL_4V8T_003 | No text annotation | ||
| HL_4V8T_004 | No text annotation | ||
| HL_4V8T_005 | T-loop with 2 stacked bulged bases | ||
| HL_4V8T_006 | No text annotation | ||
| HL_4V8T_007 | T-loop with unstacked turn | ||
| HL_4V8T_008 | No text annotation | ||
| HL_4V8T_009 | Pseudoknot geometry | ||
| HL_4V8T_010 | GNRA | ||
| HL_4V8T_011 | GNRA | ||
| HL_4V8T_012 | No text annotation | ||
| HL_4V8T_013 | GNRA | ||
| HL_4V8T_014 | T-loop with 2 stacked bulged bases | ||
| HL_4V8T_015 | No text annotation | ||
| HL_4V8T_016 | GNRA | ||
| HL_4V8T_017 | GNRA | ||
| HL_4V8T_018 | No text annotation | ||
| HL_4V8T_019 | GNRA | ||
| HL_4V8T_020 | No text annotation | ||
| HL_4V8T_021 | No text annotation | ||
| HL_4V8T_022 | Externally structured | ||
| HL_4V8T_078 | No text annotation | ||
| HL_4V8T_023 | No text annotation | ||
| HL_4V8T_024 | No text annotation | ||
| HL_4V8T_025 | GNRA | ||
| HL_4V8T_026 | No text annotation | ||
| HL_4V8T_027 | No text annotation | ||
| HL_4V8T_028 | GNRA wlth tandem sheared | ||
| HL_4V8T_029 | No text annotation | ||
| HL_4V8T_030 | GNRA | ||
| HL_4V8T_031 | T-loop with 2 stacked bulged bases | ||
| HL_4V8T_032 | Pseudoknot geometry with 3' bulge | ||
| HL_4V8T_033 | GNRA variation | ||
| HL_4V8T_034 | No text annotation | ||
| HL_4V8T_035 | No text annotation | ||
| HL_4V8T_036 | GNRA | ||
| HL_4V8T_037 | No text annotation | ||
| HL_4V8T_038 | No text annotation | ||
| HL_4V8T_079 | No text annotation | ||
| HL_4V8T_039 | GNRA related | ||
| HL_4V8T_040 | Mini UNCG | ||
| HL_4V8T_041 | No text annotation | ||
| HL_4V8T_042 | GNRA | ||
| HL_4V8T_043 | UNCG | ||
| HL_4V8T_044 | No text annotation | ||
| HL_4V8T_045 | No text annotation | ||
| HL_4V8T_046 | No text annotation | ||
| HL_4V8T_047 | GNRA | ||
| HL_4V8T_048 | GNRA | ||
| HL_4V8T_049 | No text annotation | ||
| HL_4V8T_050 | No text annotation | ||
| HL_4V8T_051 | No text annotation | ||
| HL_4V8T_052 | No text annotation | ||
| HL_4V8T_053 | No text annotation | ||
| HL_4V8T_082 | No text annotation | ||
| HL_4V8T_054 | No text annotation | ||
| HL_4V8T_055 | No text annotation | ||
| HL_4V8T_056 | No text annotation | ||
| HL_4V8T_057 | No text annotation | ||
| HL_4V8T_058 | Pseudoknot geometry | ||
| HL_4V8T_059 | No text annotation | ||
| HL_4V8T_060 | GNRA | ||
| HL_4V8T_061 | Pseudoknot geometry | ||
| HL_4V8T_062 | No text annotation | ||
| HL_4V8T_063 | No text annotation | ||
| HL_4V8T_064 | No text annotation | ||
| HL_4V8T_065 | GNRA | ||
| HL_4V8T_066 | GNRA | ||
| HL_4V8T_067 | Ribsomal LSU H95 | ||
| HL_4V8T_068 | No text annotation | ||
| HL_4V8T_069 | No text annotation | ||
| HL_4V8T_070 | No text annotation | ||
| HL_4V8T_071 | No text annotation | ||
| HL_4V8T_072 | Mini UNCG | ||
| HL_4V8T_080 | No text annotation | ||
| HL_4V8T_073 | No text annotation | ||
| HL_4V8T_074 | GNRA | ||
| HL_4V8T_081 | No text annotation | ||
| HL_4V8T_075 | No text annotation | ||
| HL_4V8T_076 | No text annotation | ||
| HL_4V8T_077 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V8T_001 | No text annotation | ||
| IL_4V8T_002 | Single bulged C | ||
| IL_4V8T_003 | Single bulged U | ||
| IL_4V8T_004 | Single stack bend | ||
| IL_4V8T_005 | tSH-tHW-tHH-tHS | ||
| IL_4V8T_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V8T_007 | No text annotation | ||
| IL_4V8T_008 | Isolated non-canonical cWW pair | ||
| IL_4V8T_009 | Single stack bend | ||
| IL_4V8T_010 | Isolated non-canonical cWW pair | ||
| IL_4V8T_153 | No text annotation | ||
| IL_4V8T_161 | No text annotation | ||
| IL_4V8T_011 | No text annotation | ||
| IL_4V8T_162 | No text annotation | ||
| IL_4V8T_012 | Major groove platform with extra pair | ||
| IL_4V8T_013 | Single bulged U | ||
| IL_4V8T_014 | Single bulged A | ||
| IL_4V8T_015 | No text annotation | ||
| IL_4V8T_016 | Triple sheared with non-canonical cWW | ||
| IL_4V8T_017 | Isolated non-canonical cWW pair | ||
| IL_4V8T_018 | No text annotation | ||
| IL_4V8T_019 | Single bulged A | ||
| IL_4V8T_020 | No text annotation | ||
| IL_4V8T_021 | No text annotation | ||
| IL_4V8T_022 | Isolated non-canonical cWW pair | ||
| IL_4V8T_023 | No text annotation | ||
| IL_4V8T_024 | UAA/GAN variation | ||
| IL_4V8T_025 | Single bulged A | ||
| IL_4V8T_026 | Single bulged U | ||
| IL_4V8T_027 | No text annotation | ||
| IL_4V8T_028 | Isolated non-canonical cWW pair | ||
| IL_4V8T_029 | tHW-tHW cross-strand stack | ||
| IL_4V8T_030 | Single bulged A | ||
| IL_4V8T_031 | Single bulged G | ||
| IL_4V8T_032 | Triple sheared | ||
| IL_4V8T_033 | Major groove platform with extra cWW | ||
| IL_4V8T_034 | Single bulged U | ||
| IL_4V8T_035 | Multiple bulged bases | ||
| IL_4V8T_036 | Isolated non-canonical cWW pair | ||
| IL_4V8T_037 | Single stack bend | ||
| IL_4V8T_154 | No text annotation | ||
| IL_4V8T_038 | Kink-turn related | ||
| IL_4V8T_039 | Single bulged G | ||
| IL_4V8T_040 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_4V8T_041 | Minor groove platform | ||
| IL_4V8T_042 | C-loop | ||
| IL_4V8T_043 | Tandem non-canonical cWW pairs | ||
| IL_4V8T_044 | Isolated non-canonical cWW pair | ||
| IL_4V8T_045 | No text annotation | ||
| IL_4V8T_046 | Multiple bulged bases | ||
| IL_4V8T_047 | Isolated non-canonical cWW pair | ||
| IL_4V8T_048 | Tandem non-canonical cWW pairs | ||
| IL_4V8T_049 | Isolated non-canonical cWW pair | ||
| IL_4V8T_050 | Single bulged A | ||
| IL_4V8T_051 | Isolated non-canonical cWW pair | ||
| IL_4V8T_052 | No text annotation | ||
| IL_4V8T_053 | UAA/GAN | ||
| IL_4V8T_054 | SSU/LSU pseudoknot | ||
| IL_4V8T_055 | Single bulged U | ||
| IL_4V8T_056 | No text annotation | ||
| IL_4V8T_057 | No text annotation | ||
| IL_4V8T_058 | Single bulged U | ||
| IL_4V8T_059 | Kink-turn | ||
| IL_4V8T_060 | No text annotation | ||
| IL_4V8T_061 | Major groove platform with extra cWW | ||
| IL_4V8T_062 | Isolated cWS basepair | ||
| IL_4V8T_063 | Single bulged A | ||
| IL_4V8T_064 | Kink-turn | ||
| IL_4V8T_065 | Single bulged A | ||
| IL_4V8T_066 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_4V8T_067 | Major groove platform; stack outside cWW | ||
| IL_4V8T_068 | No text annotation | ||
| IL_4V8T_069 | UAA/GAN | ||
| IL_4V8T_070 | Isolated cWH basepair | ||
| IL_4V8T_071 | No text annotation | ||
| IL_4V8T_155 | Major groove platform related | ||
| IL_4V8T_072 | No text annotation | ||
| IL_4V8T_073 | Isolated non-canonical cWW pair | ||
| IL_4V8T_074 | No text annotation | ||
| IL_4V8T_075 | Triple sheared | ||
| IL_4V8T_076 | Isolated non-canonical cWW pair | ||
| IL_4V8T_077 | Single bulged C | ||
| IL_4V8T_078 | Single stack bend | ||
| IL_4V8T_079 | No text annotation | ||
| IL_4V8T_080 | No text annotation | ||
| IL_4V8T_081 | Kink-turn | ||
| IL_4V8T_082 | No text annotation | ||
| IL_4V8T_083 | Isolated tWW turn | ||
| IL_4V8T_084 | Major groove platform; stack outside cWW | ||
| IL_4V8T_156 | No text annotation | ||
| IL_4V8T_085 | Intercalated tWH | ||
| IL_4V8T_086 | tSH-tSH-tHH-tHS | ||
| IL_4V8T_087 | Isolated non-canonical cWW pair | ||
| IL_4V8T_088 | No text annotation | ||
| IL_4V8T_089 | Single bulged A | ||
| IL_4V8T_090 | Kink-turn related | ||
| IL_4V8T_091 | Major groove intercalation | ||
| IL_4V8T_092 | Multiple bulged bases | ||
| IL_4V8T_093 | Single bulged U | ||
| IL_4V8T_157 | No text annotation | ||
| IL_4V8T_158 | No text annotation | ||
| IL_4V8T_094 | Bulged stacked bases | ||
| IL_4V8T_095 | No text annotation | ||
| IL_4V8T_096 | Major groove platform with extra pair | ||
| IL_4V8T_097 | Major groove platform with intercalation | ||
| IL_4V8T_098 | Single bulged U | ||
| IL_4V8T_099 | Minor groove platform | ||
| IL_4V8T_100 | Isolated tHS basepair with bulges | ||
| IL_4V8T_101 | No text annotation | ||
| IL_4V8T_102 | Isolated non-canonical cWW pair | ||
| IL_4V8T_103 | Single bulged A | ||
| IL_4V8T_104 | Isolated tHS basepair with bulges | ||
| IL_4V8T_105 | Single bulged A | ||
| IL_4V8T_106 | Tandem non-canonical cWW pairs | ||
| IL_4V8T_107 | Single stack bend | ||
| IL_4V8T_108 | Major groove platform | ||
| IL_4V8T_109 | Isolated non-canonical cWW pair | ||
| IL_4V8T_110 | Major groove platform | ||
| IL_4V8T_111 | Major groove minor groove platform with extra cWW | ||
| IL_4V8T_112 | Triple sheared | ||
| IL_4V8T_113 | Major groove platform | ||
| IL_4V8T_114 | Isolated non-canonical cWW with bulges | ||
| IL_4V8T_115 | Multiple bulged bases | ||
| IL_4V8T_116 | Isolated non-canonical cWW pair | ||
| IL_4V8T_159 | No text annotation | ||
| IL_4V8T_117 | Major groove platform with intercalation | ||
| IL_4V8T_118 | Isolated non-canonical cWW pair | ||
| IL_4V8T_119 | Single bulged A | ||
| IL_4V8T_120 | Double sheared | ||
| IL_4V8T_121 | Isolated non-canonical cWW pair | ||
| IL_4V8T_122 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V8T_123 | Major groove minor groove platform with tHH | ||
| IL_4V8T_124 | UAA/GAN related | ||
| IL_4V8T_125 | Multiple bulged bases | ||
| IL_4V8T_126 | UAA/GAN | ||
| IL_4V8T_127 | No text annotation | ||
| IL_4V8T_160 | Isolated non-canonical cWW pair | ||
| IL_4V8T_128 | Isolated non-canonical cWW pair | ||
| IL_4V8T_129 | Single bulged A | ||
| IL_4V8T_130 | No text annotation | ||
| IL_4V8T_131 | Single bulged U | ||
| IL_4V8T_132 | No text annotation | ||
| IL_4V8T_133 | Isolated non-canonical cWW pair | ||
| IL_4V8T_134 | Tandem non-canonical cWW pairs | ||
| IL_4V8T_135 | Tandem non-canonical cWW pairs | ||
| IL_4V8T_136 | Single bulged U | ||
| IL_4V8T_137 | Single bulged U | ||
| IL_4V8T_138 | Isolated non-canonical cWW pair | ||
| IL_4V8T_139 | No text annotation | ||
| IL_4V8T_140 | Single bulged U | ||
| IL_4V8T_141 | Double sheared | ||
| IL_4V8T_142 | Multiple bulged bases | ||
| IL_4V8T_143 | Single bulged A | ||
| IL_4V8T_144 | Minor groove platform related | ||
| IL_4V8T_145 | Minor groove platform | ||
| IL_4V8T_146 | Single stack bend | ||
| IL_4V8T_147 | Symmetric double minor groove platform | ||
| IL_4V8T_148 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_4V8T_149 | Isolated non-canonical cWW pair | ||
| IL_4V8T_150 | No text annotation | ||
| IL_4V8T_151 | Isolated non-canonical cWW pair | ||
| IL_4V8T_152 | Single bulged U |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4V8T_001 | No text annotation | ||
| J3_4V8T_012 | No text annotation | ||
| J3_4V8T_013 | No text annotation | ||
| J3_4V8T_014 | No text annotation | ||
| J3_4V8T_015 | No text annotation | ||
| J3_4V8T_016 | No text annotation | ||
| J3_4V8T_017 | No text annotation | ||
| J3_4V8T_002 | No text annotation | ||
| J3_4V8T_003 | No text annotation | ||
| J3_4V8T_018 | No text annotation | ||
| J3_4V8T_004 | No text annotation | ||
| J3_4V8T_005 | No text annotation | ||
| J3_4V8T_006 | No text annotation | ||
| J3_4V8T_019 | No text annotation | ||
| J3_4V8T_020 | No text annotation | ||
| J3_4V8T_021 | No text annotation | ||
| J3_4V8T_022 | No text annotation | ||
| J3_4V8T_007 | No text annotation | ||
| J3_4V8T_008 | No text annotation | ||
| J3_4V8T_023 | No text annotation | ||
| J3_4V8T_009 | No text annotation | ||
| J3_4V8T_010 | No text annotation | ||
| J3_4V8T_024 | No text annotation | ||
| J3_4V8T_011 | No text annotation | ||
| J3_4V8T_025 | No text annotation | ||
| J3_4V8T_026 | No text annotation | ||
| J4_4V8T_001 | No text annotation | ||
| J4_4V8T_002 | No text annotation | ||
| J4_4V8T_003 | No text annotation | ||
| J4_4V8T_004 | No text annotation | ||
| J4_4V8T_005 | No text annotation | ||
| J4_4V8T_006 | No text annotation | ||
| J4_4V8T_007 | No text annotation | ||
| J4_4V8T_008 | No text annotation | ||
| J4_4V8T_009 | No text annotation | ||
| J4_4V8T_010 | No text annotation | ||
| J4_4V8T_011 | No text annotation | ||
| J5_4V8T_001 | No text annotation | ||
| J5_4V8T_002 | No text annotation | ||
| J5_4V8T_003 | No text annotation | ||
| J5_4V8T_004 | No text annotation | ||
| J5_4V8T_005 | No text annotation | ||
| J5_4V8T_006 | No text annotation | ||
| J6_4V8T_001 | No text annotation | ||
| J6_4V8T_002 | No text annotation | ||
| J7_4V8T_001 | No text annotation |
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