HL_4V8T_035
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 4V8T|1|5|U|1606, 4V8T|1|5|U|1607
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8T_035 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.0498
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V8T|1|5|G|1599
4V8T|1|5|U|1600
4V8T|1|5|U|1601
4V8T|1|5|A|1602
4V8T|1|5|A|1603
4V8T|1|5|G|1604
4V8T|1|5|A|1605
4V8T|1|5|U|1606
4V8T|1|5|U|1607
4V8T|1|5|C|1608
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain R
- 60S RIBOSOMAL PROTEIN L19-B
- Chain X
- 60S RIBOSOMAL PROTEIN L25
- Chain g
- 60S RIBOSOMAL PROTEIN L34-A
- Chain t
- PROBABLE METALLOPROTEASE ARX1
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