HL_4V8T_040

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

4V8T|1|5|C|1793

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8T_040 not in the Motif Atlas

Homologous match to HL_5TBW_040

Geometric discrepancy: 0.0643

The information below is about HL_5TBW_040

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

4V8T|1|5|C|1792
4V8T|1|5|C|1793
4V8T|1|5|G|1794
4V8T|1|5|U|1795
4V8T|1|5|G|1796

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L2-B

Chain p

60S RIBOSOMAL PROTEIN L43-A