HL_4V8T_066

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8T_066 not in the Motif Atlas

Geometric match to HL_5TBW_065

Geometric discrepancy: 0.0781

The information below is about HL_5TBW_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V8T|1|5|C|3025
4V8T|1|5|G|3026
4V8T|1|5|A|3027
4V8T|1|5|G|3028
4V8T|1|5|A|3029
4V8T|1|5|G|3030

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain H

60S RIBOSOMAL PROTEIN L9-A

Chain m

60S RIBOSOMAL PROTEIN L40