HL_4V8U_030

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CCUACGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8U_030 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3576

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V8U|1|AA|C|1444
4V8U|1|AA|C|1445
4V8U|1|AA|U|1446
4V8U|1|AA|A|1447
4V8U|1|AA|C|1452
4V8U|1|AA|G|1456
4V8U|1|AA|G|1457
4V8U|1|AA|G|1458

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AT

30S RIBOSOMAL PROTEIN S20