HL_4V8U_035

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V8U|1|AW|G|18, 4V8U|1|AW|G|19, 4V8U|1|AW|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8U_035 not in the Motif Atlas

Homologous match to HL_3WQY_001

Geometric discrepancy: 0.2993

The information below is about HL_3WQY_001

Detailed Annotation

tRNA D-loop

Broad Annotation

tRNA D-loop

Motif group

HL_57684.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V8U|1|AW|C|13
4V8U|1|AW|A|14
4V8U|1|AW|G|15
4V8U|1|AW|C|16
4V8U|1|AW|C|17
4V8U|1|AW|U|17|||A
4V8U|1|AW|G|18
4V8U|1|AW|G|19
4V8U|1|AW|U|20
4V8U|1|AW|A|21
4V8U|1|AW|G|22

Current chains

Chain AW

RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

50S RIBOSOMAL PROTEIN L1