HL_4V8U_133

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4V8U|1|CA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8U_133 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1004

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

4V8U|1|CA|G|1089
4V8U|1|CA|U|1090
4V8U|1|CA|U|1091
4V8U|1|CA|A|1092
4V8U|1|CA|A|1093
4V8U|1|CA|G|1094
4V8U|1|CA|U|1095
4V8U|1|CA|C|1096

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CG

30S RIBOSOMAL PROTEIN S7