HL_4V8U_176

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8U_176 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.2213

The information below is about HL_6PRV_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V8U|1|DA|C|1092
4V8U|1|DA|G|1093
4V8U|1|DA|U|1094
4V8U|1|DA|A|1095
4V8U|1|DA|A|1096
4V8U|1|DA|U|1097
4V8U|1|DA|A|1098
4V8U|1|DA|G|1099

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CY

ELONGATION FACTOR G

Chain D9

50S RIBOSOMAL PROTEIN L36

Chain DH

50S RIBOSOMAL PROTEIN L6