HL_4V8X_033
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8X_033 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0943
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
4V8X|1|AV|G|31
4V8X|1|AV|C|32
4V8X|1|AV|U|33
4V8X|1|AV|C|34
4V8X|1|AV|A|35
4V8X|1|AV|U|36
4V8X|1|AV|A|37
4V8X|1|AV|A|38
4V8X|1|AV|C|39
Current chains
- Chain AV
- transfer RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S RIBOSOMAL PROTEIN S9
- Chain AW
- Transfer RNA; tRNA
- Chain AX
- 5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3'
- Chain AY
- TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM
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