HL_4V8X_034
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- G(5MU)UCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4V8X|1|AV|U|55
- QA status
- Modified nucleotides: 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8X_034 not in the Motif Atlas
- Homologous match to HL_4WT8_217
- Geometric discrepancy: 0.1012
- The information below is about HL_4WT8_217
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V8X|1|AV|G|53
4V8X|1|AV|5MU|54
4V8X|1|AV|U|55
4V8X|1|AV|C|56
4V8X|1|AV|A|57
4V8X|1|AV|A|58
4V8X|1|AV|A|59
4V8X|1|AV|U|60
4V8X|1|AV|C|61
Current chains
- Chain AV
- transfer RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BG
- 50S RIBOSOMAL PROTEIN L5
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
Coloring options: