HL_4WT8_217

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

4WT8|1|D4|G|54
4WT8|1|D4|U|55
4WT8|1|D4|U|56
4WT8|1|D4|C|57
4WT8|1|D4|A|58
4WT8|1|D4|A|59
4WT8|1|D4|A|60
4WT8|1|D4|U|61
4WT8|1|D4|C|62

Current chains

Chain D4

tRNA (76-MER)

Nearby chains

Chain D1

Large subunit ribosomal RNA; LSU rRNA

Chain DE

50S ribosomal protein L5

Chain DP

50S ribosomal protein L16