HL_4V8X_088

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

4V8X|1|BA|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8X_088 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.4616

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

4V8X|1|BA|C|2143
4V8X|1|BA|U|2144
4V8X|1|BA|C|2145
4V8X|1|BA|C|2146
4V8X|1|BA|G|2147
4V8X|1|BA|G|2148

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AK

30S RIBOSOMAL PROTEIN S11