HL_4V8X_217

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGGUGAAAGCCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8X_217 not in the Motif Atlas

Homologous match to HL_5J7L_216

Geometric discrepancy: 0.4301

The information below is about HL_5J7L_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78284.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V8X|1|AA|G|1009
4V8X|1|AA|G|1010
4V8X|1|AA|G|1011
4V8X|1|AA|U|1012
4V8X|1|AA|G|1013
4V8X|1|AA|A|1014
4V8X|1|AA|A|1015
4V8X|1|AA|A|1016
4V8X|1|AA|G|1017
4V8X|1|AA|C|1018
4V8X|1|AA|C|1019
4V8X|1|AA|U|1020

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AS

30S RIBOSOMAL PROTEIN S19