HL_4V8X_221
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- AGCAGCCUGGUAGCU
- Length
- 15 nucleotides
- Bulged bases
- 4V8X|1|AW|C|16, 4V8X|1|AW|G|18, 4V8X|1|AW|G|19, 4V8X|1|AW|U|20, 4V8X|1|AW|A|21
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8X_221 not in the Motif Atlas
- Homologous match to HL_4V9I_038
- Geometric discrepancy: 0.4191
- The information below is about HL_4V9I_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68572.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V8X|1|AW|A|11
4V8X|1|AW|G|12
4V8X|1|AW|C|13
4V8X|1|AW|A|14
4V8X|1|AW|G|15
4V8X|1|AW|C|16
4V8X|1|AW|C|17
4V8X|1|AW|U|17|||A
4V8X|1|AW|G|18
4V8X|1|AW|G|19
4V8X|1|AW|U|20
4V8X|1|AW|A|21
4V8X|1|AW|G|22
4V8X|1|AW|C|23
4V8X|1|AW|U|24
Current chains
- Chain AW
- transfer RNA
Nearby chains
- Chain AK
- 30S RIBOSOMAL PROTEIN S11
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S RIBOSOMAL PROTEIN L1
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