HL_4V8Y_012

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

4V8Y|1|B2|A|452, 4V8Y|1|B2|U|454, 4V8Y|1|B2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_012 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.1085

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8Y|1|B2|U|450
4V8Y|1|B2|A|451
4V8Y|1|B2|A|452
4V8Y|1|B2|U|453
4V8Y|1|B2|U|454
4V8Y|1|B2|C|455
4V8Y|1|B2|A|456

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AY

40S RIBOSOMAL PROTEIN S24-A