HL_4V8Y_065
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 4V8Y|1|B5|G|1354, 4V8Y|1|B5|U|1356
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Y_065 not in the Motif Atlas
- Homologous match to HL_8P9A_141
- Geometric discrepancy: 0.5041
- The information below is about HL_8P9A_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_29762.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V8Y|1|B5|U|1347
4V8Y|1|B5|U|1348
4V8Y|1|B5|G|1349
4V8Y|1|B5|A|1350
4V8Y|1|B5|U|1351
4V8Y|1|B5|A|1352
4V8Y|1|B5|U|1353
4V8Y|1|B5|G|1354
4V8Y|1|B5|A|1355
4V8Y|1|B5|U|1356
4V8Y|1|B5|G|1357
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BE
- 60S RIBOSOMAL PROTEIN L6-A
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18-A
- Chain Be
- 60S RIBOSOMAL PROTEIN L32
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