HL_8P9A_141

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

8P9A|1|AR|A|1352, 8P9A|1|AR|U|1353, 8P9A|1|AR|G|1354, 8P9A|1|AR|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_29762.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8P9A|1|AR|U|1347
8P9A|1|AR|U|1348
8P9A|1|AR|G|1349
8P9A|1|AR|A|1350
8P9A|1|AR|U|1351
8P9A|1|AR|A|1352
8P9A|1|AR|U|1353
8P9A|1|AR|G|1354
8P9A|1|AR|A|1355
8P9A|1|AR|U|1356
8P9A|1|AR|G|1357

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L4-A

Chain CH

60S ribosomal protein L6-A

Chain CS

60S ribosomal protein L18-A

Chain DG

60S ribosomal protein L32