HL_4V8Y_073

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

4V8Y|1|B5|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_073 not in the Motif Atlas

Homologous match to HL_5TBW_037

Geometric discrepancy: 0.0804

The information below is about HL_5TBW_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V8Y|1|B5|G|1680
4V8Y|1|B5|U|1681
4V8Y|1|B5|U|1682
4V8Y|1|B5|A|1683
4V8Y|1|B5|U|1684
4V8Y|1|B5|C|1685
4V8Y|1|B5|U|1686
4V8Y|1|B5|U|1687
4V8Y|1|B5|U|1688

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19-B

Chain BU

60S RIBOSOMAL PROTEIN L22-A