HL_4V8Y_112
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CACAUUG
- Length
- 7 nucleotides
- Bulged bases
- 4V8Y|1|B8|A|111, 4V8Y|1|B8|U|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V8Y_112 not in the Motif Atlas
- Homologous match to HL_5TBW_075
- Geometric discrepancy: 0.0714
- The information below is about HL_5TBW_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
4V8Y|1|B8|C|108
4V8Y|1|B8|A|109
4V8Y|1|B8|C|110
4V8Y|1|B8|A|111
4V8Y|1|B8|U|112
4V8Y|1|B8|U|113
4V8Y|1|B8|G|114
Current chains
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- 60S RIBOSOMAL PROTEIN L25
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
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