HL_4V8Y_114

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Y_114 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.1579

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

4V8Y|1|CN|C|2164
4V8Y|1|CN|U|2165
4V8Y|1|CN|C|2166
4V8Y|1|CN|C|2167
4V8Y|1|CN|G|2168
4V8Y|1|CN|G|2169

Current chains

Chain CN

EUKARYOTIC RIBOSOMAL L1_RRNA

Nearby chains