HL_4V8Z_004

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_004 not in the Motif Atlas

Homologous match to HL_4V88_189

Geometric discrepancy: 0.3828

The information below is about HL_4V88_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

4V8Z|1|B2|C|190
4V8Z|1|B2|C|191
4V8Z|1|B2|U|192
4V8Z|1|B2|U|193
4V8Z|1|B2|U|194
4V8Z|1|B2|G|195

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AI

40S RIBOSOMAL PROTEIN S8-A