Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V8Z_0911/B5/2616:2624No text annotation
homologous
HL_5TBW_054
NA

Problematic loops

#loop idProblemSequence
HL_4V8Z_001No text annotation
HL_4V8Z_002No text annotation
HL_4V8Z_003GNRA related
HL_4V8Z_004No text annotation
HL_4V8Z_117No text annotation
HL_4V8Z_005No text annotation
HL_4V8Z_006T-loop with 1 bulged base
HL_4V8Z_007Mini UNCG
HL_4V8Z_008GNRA related
HL_4V8Z_009No text annotation
HL_4V8Z_010No text annotation
HL_4V8Z_011UNCG
HL_4V8Z_012No text annotation
HL_4V8Z_118No text annotation
HL_4V8Z_013No text annotation
HL_4V8Z_126No text annotation
HL_4V8Z_014No text annotation
HL_4V8Z_015GNRA variation
HL_4V8Z_016No text annotation
HL_4V8Z_017No text annotation
HL_4V8Z_119No text annotation
HL_4V8Z_018No text annotation
HL_4V8Z_019Pseudoknot geometry
HL_4V8Z_020No text annotation
HL_4V8Z_021GNRA
HL_4V8Z_022No text annotation
HL_4V8Z_023No text annotation
HL_4V8Z_120No text annotation
HL_4V8Z_024GNRA
HL_4V8Z_025GNRA
HL_4V8Z_026No text annotation
HL_4V8Z_027Anticodon loop related
HL_4V8Z_028GNRA
HL_4V8Z_029No text annotation
HL_4V8Z_030No text annotation
HL_4V8Z_031GNRA
HL_4V8Z_032GNRA
HL_4V8Z_033No text annotation
HL_4V8Z_034No text annotation
HL_4V8Z_121No text annotation
HL_4V8Z_035No text annotation
HL_4V8Z_036GNRA variation
HL_4V8Z_037No text annotation
HL_4V8Z_038No text annotation
HL_4V8Z_039No text annotation
HL_4V8Z_040No text annotation
HL_4V8Z_041T-loop with 2 stacked bulged bases
HL_4V8Z_042No text annotation
HL_4V8Z_043T-loop with unstacked turn
HL_4V8Z_044No text annotation
HL_4V8Z_045Pseudoknot geometry
HL_4V8Z_046GNRA
HL_4V8Z_047GNRA
HL_4V8Z_048No text annotation
HL_4V8Z_049GNRA
HL_4V8Z_050T-loop with 2 stacked bulged bases
HL_4V8Z_051No text annotation
HL_4V8Z_052GNRA
HL_4V8Z_053GNRA
HL_4V8Z_054No text annotation
HL_4V8Z_055GNRA
HL_4V8Z_056No text annotation
HL_4V8Z_057No text annotation
HL_4V8Z_058Externally structured
HL_4V8Z_122No text annotation
HL_4V8Z_059No text annotation
HL_4V8Z_060No text annotation
HL_4V8Z_061GNRA
HL_4V8Z_062No text annotation
HL_4V8Z_063No text annotation
HL_4V8Z_064No text annotation
HL_4V8Z_065No text annotation
HL_4V8Z_066GNRA
HL_4V8Z_067T-loop with 2 stacked bulged bases
HL_4V8Z_068Pseudoknot geometry with 3' bulge
HL_4V8Z_069GNRA variation
HL_4V8Z_070No text annotation
HL_4V8Z_071No text annotation
HL_4V8Z_072GNRA
HL_4V8Z_073No text annotation
HL_4V8Z_074No text annotation
HL_4V8Z_123No text annotation
HL_4V8Z_075GNRA related
HL_4V8Z_076Mini UNCG
HL_4V8Z_077No text annotation
HL_4V8Z_078GNRA
HL_4V8Z_079UNCG
HL_4V8Z_080No text annotation
HL_4V8Z_081No text annotation
HL_4V8Z_082No text annotation
HL_4V8Z_083GNRA
HL_4V8Z_084GNRA
HL_4V8Z_085No text annotation
HL_4V8Z_086No text annotation
HL_4V8Z_087No text annotation
HL_4V8Z_088No text annotation
HL_4V8Z_089No text annotation
HL_4V8Z_127No text annotation
HL_4V8Z_090No text annotation
HL_4V8Z_092No text annotation
HL_4V8Z_093No text annotation
HL_4V8Z_094Pseudoknot geometry
HL_4V8Z_095No text annotation
HL_4V8Z_096GNRA
HL_4V8Z_097Pseudoknot geometry
HL_4V8Z_098No text annotation
HL_4V8Z_099No text annotation
HL_4V8Z_100No text annotation
HL_4V8Z_101GNRA
HL_4V8Z_102GNRA
HL_4V8Z_103Ribsomal LSU H95
HL_4V8Z_104No text annotation
HL_4V8Z_105No text annotation
HL_4V8Z_106No text annotation
HL_4V8Z_107No text annotation
HL_4V8Z_108Mini UNCG
HL_4V8Z_124No text annotation
HL_4V8Z_109No text annotation
HL_4V8Z_110GNRA
HL_4V8Z_125No text annotation
HL_4V8Z_111No text annotation
HL_4V8Z_112No text annotation
HL_4V8Z_113No text annotation
HL_4V8Z_114No text annotation
HL_4V8Z_115tRNA anticodon loop
HL_4V8Z_116T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V8Z_1411/B5/1074:1076,
1/B5/1083:1084
Single bulged G
homologous
IL_8C3A_048
NA

Problematic loops

#loop idProblemSequence
IL_4V8Z_001Single bulged C
IL_4V8Z_002Isolated non-canonical cWW pair
IL_4V8Z_003Triple sheared related
IL_4V8Z_004No text annotation
IL_4V8Z_005Minor groove platform
IL_4V8Z_006No text annotation
IL_4V8Z_007No text annotation
IL_4V8Z_008Tandem non-canonical cWW pairs
IL_4V8Z_009Multiple bulged bases
IL_4V8Z_010No text annotation
IL_4V8Z_011tWH-tWH-tHW-tHW
IL_4V8Z_012Isolated cWH basepair
IL_4V8Z_013Double sheared
IL_4V8Z_014Major groove platform with extra cWW
IL_4V8Z_015Isolated non-canonical cWW pair
IL_4V8Z_016No text annotation
IL_4V8Z_017Single bulged A
IL_4V8Z_018No text annotation
IL_4V8Z_019Single bulged U
IL_4V8Z_020Kink-turn with non-sequential stacking
IL_4V8Z_021No text annotation
IL_4V8Z_022No text annotation
IL_4V8Z_023Isolated cWH basepair
IL_4V8Z_024Isolated near basepair
IL_4V8Z_025Single bulged U
IL_4V8Z_255C-loop
IL_4V8Z_026C-loop with extra cWW pair
IL_4V8Z_256Single bulged G
IL_4V8Z_027No text annotation
IL_4V8Z_257Minor groove platform
IL_4V8Z_028Double sheared
IL_4V8Z_258Minor groove platform
IL_4V8Z_029SSU/LSU pseudoknot
IL_4V8Z_030Single bulged U
IL_4V8Z_031Kink-turn related
IL_4V8Z_032No text annotation
IL_4V8Z_033Isolated non-canonical cWW pair
IL_4V8Z_034tSH-tHW-tHS
IL_4V8Z_035Isolated non-canonical cWW pair
IL_4V8Z_036Isolated non-canonical cWW pair
IL_4V8Z_243No text annotation
IL_4V8Z_037No text annotation
IL_4V8Z_038Isolated non-canonical cWW pair
IL_4V8Z_039Major groove minor groove platform; mini C-loop
IL_4V8Z_040Isolated non-canonical cWW pair
IL_4V8Z_259No text annotation
IL_4V8Z_041No text annotation
IL_4V8Z_042No text annotation
IL_4V8Z_043Isolated cWH basepair
IL_4V8Z_044Major groove platform; stack outside cWW
IL_4V8Z_045Tandem non-canonical cWW pairs
IL_4V8Z_244Isolated non-canonical cWW pair
IL_4V8Z_046Tandem non-canonical cWW pairs
IL_4V8Z_047Tandem non-canonical cWW pairs
IL_4V8Z_048Tandem non-canonical cWW pairs
IL_4V8Z_049Kink-turn related
IL_4V8Z_050Other IL
IL_4V8Z_051tSH-tHW-tHS
IL_4V8Z_052No text annotation
IL_4V8Z_053Tandem non-canonical cWW pairs
IL_4V8Z_054Single bulged U
IL_4V8Z_0558x6 Sarcin-Ricin with inserted Y; G-bulge
IL_4V8Z_056Single bulged A
IL_4V8Z_057Single bulged G
IL_4V8Z_058C-loop
IL_4V8Z_059Isolated non-canonical cWW pair
IL_4V8Z_060Minor groove platform
IL_4V8Z_061Isolated non-canonical cWW pair
IL_4V8Z_062No text annotation
IL_4V8Z_245No text annotation
IL_4V8Z_260No text annotation
IL_4V8Z_261No text annotation
IL_4V8Z_063No text annotation
IL_4V8Z_064No text annotation
IL_4V8Z_065Single bulged U
IL_4V8Z_066No text annotation
IL_4V8Z_067Single bulged A
IL_4V8Z_068Isolated cWH basepair
IL_4V8Z_069Minor groove platform
IL_4V8Z_070Isolated non-canonical cWW pair
IL_4V8Z_071Minor groove platform
IL_4V8Z_246No text annotation
IL_4V8Z_072Isolated non-canonical cWW pair
IL_4V8Z_073Major groove platform; stack outside cWW
IL_4V8Z_074No text annotation
IL_4V8Z_075180 degree turn
IL_4V8Z_076Tandem non-canonical cWW pairs
IL_4V8Z_077No text annotation
IL_4V8Z_078No text annotation
IL_4V8Z_079No text annotation
IL_4V8Z_080Isolated non-canonical cWW pair
IL_4V8Z_081Non canonical cWW and near pair
IL_4V8Z_082Isolated non-canonical cWW pair
IL_4V8Z_083Double sheared
IL_4V8Z_084Single bulged U
IL_4V8Z_085Isolated non-canonical cWW pair
IL_4V8Z_086Double sheared
IL_4V8Z_087Isolated non-canonical cWW pair
IL_4V8Z_088Tandem non-canonical cWW pairs
IL_4V8Z_089Triple sheared
IL_4V8Z_090No text annotation
IL_4V8Z_091Tandem non-canonical cWW pairs
IL_4V8Z_092No text annotation
IL_4V8Z_093Single bulged C
IL_4V8Z_094Single bulged U
IL_4V8Z_095Single stack bend
IL_4V8Z_096tSH-tHW-tHH-tHS
IL_4V8Z_0978x7 Sarcin-Ricin; G-bulge
IL_4V8Z_098No text annotation
IL_4V8Z_099Isolated non-canonical cWW pair
IL_4V8Z_100Single stack bend
IL_4V8Z_101Isolated non-canonical cWW pair
IL_4V8Z_247No text annotation
IL_4V8Z_262No text annotation
IL_4V8Z_102No text annotation
IL_4V8Z_263No text annotation
IL_4V8Z_103Major groove platform with extra pair
IL_4V8Z_104Single bulged U
IL_4V8Z_105Single bulged A
IL_4V8Z_106No text annotation
IL_4V8Z_107Triple sheared with non-canonical cWW
IL_4V8Z_108Isolated non-canonical cWW pair
IL_4V8Z_109No text annotation
IL_4V8Z_110Single bulged A
IL_4V8Z_111No text annotation
IL_4V8Z_112No text annotation
IL_4V8Z_113Isolated non-canonical cWW pair
IL_4V8Z_114No text annotation
IL_4V8Z_115UAA/GAN variation
IL_4V8Z_116Single bulged A
IL_4V8Z_117Single bulged U
IL_4V8Z_118No text annotation
IL_4V8Z_119Isolated non-canonical cWW pair
IL_4V8Z_120tHW-tHW cross-strand stack
IL_4V8Z_121Single bulged A
IL_4V8Z_122Single bulged G
IL_4V8Z_123Triple sheared
IL_4V8Z_124Major groove platform with extra cWW
IL_4V8Z_125Single bulged U
IL_4V8Z_126Multiple bulged bases
IL_4V8Z_127Isolated non-canonical cWW pair
IL_4V8Z_128Single stack bend
IL_4V8Z_248No text annotation
IL_4V8Z_129Kink-turn related
IL_4V8Z_130Single bulged G
IL_4V8Z_1317x7 Sarcin-Ricin with intercalated A; G-bulge
IL_4V8Z_132Minor groove platform
IL_4V8Z_133C-loop
IL_4V8Z_134Tandem non-canonical cWW pairs
IL_4V8Z_135Isolated non-canonical cWW pair
IL_4V8Z_136No text annotation
IL_4V8Z_137Multiple bulged bases
IL_4V8Z_138Isolated non-canonical cWW pair
IL_4V8Z_139Tandem non-canonical cWW pairs
IL_4V8Z_140Isolated non-canonical cWW pair
IL_4V8Z_142Isolated non-canonical cWW pair
IL_4V8Z_143No text annotation
IL_4V8Z_144UAA/GAN
IL_4V8Z_145SSU/LSU pseudoknot
IL_4V8Z_146Single bulged U
IL_4V8Z_147No text annotation
IL_4V8Z_148No text annotation
IL_4V8Z_149Single bulged U
IL_4V8Z_150No text annotation
IL_4V8Z_151Isolated cWS basepair
IL_4V8Z_152Single bulged A
IL_4V8Z_153Kink-turn
IL_4V8Z_154Single bulged A
IL_4V8Z_1557x6 Sarcin-Ricin; G-bulge
IL_4V8Z_156Major groove platform; stack outside cWW
IL_4V8Z_157No text annotation
IL_4V8Z_158UAA/GAN
IL_4V8Z_159Isolated cWH basepair
IL_4V8Z_160No text annotation
IL_4V8Z_249Major groove platform related
IL_4V8Z_161No text annotation
IL_4V8Z_162Isolated non-canonical cWW pair
IL_4V8Z_163No text annotation
IL_4V8Z_164Triple sheared
IL_4V8Z_165Isolated non-canonical cWW pair
IL_4V8Z_166Single bulged C
IL_4V8Z_167Single stack bend
IL_4V8Z_168No text annotation
IL_4V8Z_169No text annotation
IL_4V8Z_170Kink-turn
IL_4V8Z_171No text annotation
IL_4V8Z_172Isolated tWW turn
IL_4V8Z_173Major groove platform; stack outside cWW
IL_4V8Z_250No text annotation
IL_4V8Z_174Intercalated tWH
IL_4V8Z_175tSH-tSH-tHH-tHS
IL_4V8Z_176Isolated non-canonical cWW pair
IL_4V8Z_177No text annotation
IL_4V8Z_178Single bulged A
IL_4V8Z_179Kink-turn related
IL_4V8Z_180Major groove intercalation
IL_4V8Z_181Multiple bulged bases
IL_4V8Z_182Single bulged U
IL_4V8Z_251No text annotation
IL_4V8Z_252No text annotation
IL_4V8Z_183Bulged stacked bases
IL_4V8Z_184No text annotation
IL_4V8Z_185Major groove platform with extra pair
IL_4V8Z_186Major groove platform with intercalation
IL_4V8Z_187Single bulged U
IL_4V8Z_188Minor groove platform
IL_4V8Z_189Isolated tHS basepair with bulges
IL_4V8Z_190No text annotation
IL_4V8Z_191Isolated non-canonical cWW pair
IL_4V8Z_192Single bulged A
IL_4V8Z_193Isolated tHS basepair with bulges
IL_4V8Z_194Single bulged A
IL_4V8Z_195Tandem non-canonical cWW pairs
IL_4V8Z_196Single stack bend
IL_4V8Z_197Major groove platform
IL_4V8Z_198Isolated non-canonical cWW pair
IL_4V8Z_199Major groove platform
IL_4V8Z_200Major groove minor groove platform with extra cWW
IL_4V8Z_201Triple sheared
IL_4V8Z_202Major groove platform
IL_4V8Z_203Isolated non-canonical cWW with bulges
IL_4V8Z_204Multiple bulged bases
IL_4V8Z_205Isolated non-canonical cWW pair
IL_4V8Z_253No text annotation
IL_4V8Z_206Major groove platform with intercalation
IL_4V8Z_207Isolated non-canonical cWW pair
IL_4V8Z_208Single bulged A
IL_4V8Z_209Double sheared
IL_4V8Z_210Isolated non-canonical cWW pair
IL_4V8Z_2118x7 Sarcin-Ricin; G-bulge
IL_4V8Z_212Major groove minor groove platform with tHH
IL_4V8Z_213UAA/GAN related
IL_4V8Z_214Multiple bulged bases
IL_4V8Z_215UAA/GAN
IL_4V8Z_216No text annotation
IL_4V8Z_254Isolated non-canonical cWW pair
IL_4V8Z_217Isolated non-canonical cWW pair
IL_4V8Z_218Single bulged A
IL_4V8Z_219No text annotation
IL_4V8Z_220Single bulged U
IL_4V8Z_221No text annotation
IL_4V8Z_222Isolated non-canonical cWW pair
IL_4V8Z_223Tandem non-canonical cWW pairs
IL_4V8Z_224Tandem non-canonical cWW pairs
IL_4V8Z_225Single bulged U
IL_4V8Z_226Single bulged U
IL_4V8Z_227Isolated non-canonical cWW pair
IL_4V8Z_228No text annotation
IL_4V8Z_229Single bulged U
IL_4V8Z_230Double sheared
IL_4V8Z_231Multiple bulged bases
IL_4V8Z_232Single bulged A
IL_4V8Z_233Minor groove platform related
IL_4V8Z_234Minor groove platform
IL_4V8Z_235Single stack bend
IL_4V8Z_236Symmetric double minor groove platform
IL_4V8Z_2378x7 Sarcin-Ricin; G-bulge
IL_4V8Z_238Isolated non-canonical cWW pair
IL_4V8Z_239No text annotation
IL_4V8Z_240Isolated non-canonical cWW pair
IL_4V8Z_241Single bulged U
IL_4V8Z_242Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V8Z_0361/B5/1537:1542,
1/B5/1551:1560,
1/B5/1579:1584
No text annotation

Problematic loops

#loop idProblemSequence
J3_4V8Z_021No text annotation
J3_4V8Z_022No text annotation
J3_4V8Z_023No text annotation
J3_4V8Z_024No text annotation
J3_4V8Z_025No text annotation
J3_4V8Z_001No text annotation
J3_4V8Z_002No text annotation
J3_4V8Z_003No text annotation
J3_4V8Z_004No text annotation
J3_4V8Z_005No text annotation
J3_4V8Z_006No text annotation
J3_4V8Z_007No text annotation
J3_4V8Z_008No text annotation
J3_4V8Z_026No text annotation
J3_4V8Z_009No text annotation
J3_4V8Z_027No text annotation
J3_4V8Z_010No text annotation
J3_4V8Z_011No text annotation
J3_4V8Z_028No text annotation
J3_4V8Z_029No text annotation
J3_4V8Z_030No text annotation
J3_4V8Z_031No text annotation
J3_4V8Z_032No text annotation
J3_4V8Z_033No text annotation
J3_4V8Z_012No text annotation
J3_4V8Z_013No text annotation
J3_4V8Z_034No text annotation
J3_4V8Z_014No text annotation
J3_4V8Z_015No text annotation
J3_4V8Z_035No text annotation
J3_4V8Z_037No text annotation
J3_4V8Z_038No text annotation
J3_4V8Z_016No text annotation
J3_4V8Z_017No text annotation
J3_4V8Z_039No text annotation
J3_4V8Z_018No text annotation
J3_4V8Z_019No text annotation
J3_4V8Z_040No text annotation
J3_4V8Z_020No text annotation
J3_4V8Z_041No text annotation
J3_4V8Z_042No text annotation
J4_4V8Z_001No text annotation
J4_4V8Z_002No text annotation
J4_4V8Z_003No text annotation
J4_4V8Z_004No text annotation
J4_4V8Z_005No text annotation
J4_4V8Z_006No text annotation
J4_4V8Z_007No text annotation
J4_4V8Z_008No text annotation
J4_4V8Z_009No text annotation
J4_4V8Z_010No text annotation
J4_4V8Z_011No text annotation
J4_4V8Z_012No text annotation
J4_4V8Z_013No text annotation
J5_4V8Z_001No text annotation
J5_4V8Z_002No text annotation
J5_4V8Z_003No text annotation
J5_4V8Z_004No text annotation
J5_4V8Z_005No text annotation
J5_4V8Z_006No text annotation
J5_4V8Z_007No text annotation
J5_4V8Z_008No text annotation
J5_4V8Z_009No text annotation
J5_4V8Z_010No text annotation
J5_4V8Z_011No text annotation
J6_4V8Z_001No text annotation
J6_4V8Z_002No text annotation
J7_4V8Z_001No text annotation

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