HL_4V8Z_005

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V8Z|1|B2|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V8Z_005 not in the Motif Atlas

Geometric match to HL_6CZR_082

Geometric discrepancy: 0.3285

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

4V8Z|1|B2|C|230
4V8Z|1|B2|U|231
4V8Z|1|B2|U|232
4V8Z|1|B2|C|233
4V8Z|1|B2|G|234
4V8Z|1|B2|G|235

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains